Protein Info for Ga0059261_0582 in Sphingomonas koreensis DSMZ 15582

Annotation: Outer membrane receptor proteins, mostly Fe transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1088 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07660: STN" amino acids 49 to 99 (51 residues), 28.6 bits, see alignment 3e-10 PF13620: CarboxypepD_reg" amino acids 117 to 193 (77 residues), 47.5 bits, see alignment 6e-16 PF13715: CarbopepD_reg_2" amino acids 118 to 197 (80 residues), 44.2 bits, see alignment 4.9e-15 PF07715: Plug" amino acids 227 to 331 (105 residues), 30.4 bits, see alignment E=1.4e-10 PF00593: TonB_dep_Rec" amino acids 573 to 1055 (483 residues), 93.4 bits, see alignment E=8.8e-30 PF14905: OMP_b-brl_3" amino acids 725 to 1076 (352 residues), 56.9 bits, see alignment E=6e-19

Best Hits

KEGG orthology group: None (inferred from 67% identity to psu:Psesu_1602)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8W6 at UniProt or InterPro

Protein Sequence (1088 amino acids)

>Ga0059261_0582 Outer membrane receptor proteins, mostly Fe transport (Sphingomonas koreensis DSMZ 15582)
MFIRNSILSGTAIAAVIAATPAIAQERSFDLPAQPAVKAIPAFARQAQLQIVASARDLAG
VRTPAIKGRMDARAALRRLIAGTPLKIASDDGQVVTLRSARAPASPQSGRVIGQGVLAGR
VLNTATGEYVRNAEIRAEGTTIVAYSDEGGNFRLTGLPAGQVTIIVRYTGLQETRAMATV
AAGQVATLQVALEAQSFAADGGGEVESVTITAARDGQAAAIMERRAAMNAKTVVAADNYG
GLTMGDVGEFMKNMPGLSLDYTEVDATAVRIGGLDPKYSTFTTDGARMATATSNNNNGRQ
NSFEQMSITGIESIELNNTLTASMDADSPGGSINLRSKYAFQRKGRQLRFQLGGVGTSDS
ALSPAYFPDDRKHARIYPSGQIGFADVVLDGRLGIAFNASYNANYVQQDRIQTDWSYLPG
GRVMPYQVMWRPGPKFTSRTAANLALDYKITDDLAFSLRSSYSYYDVEYFNQYTYLIFGT
TTRSYATPDSTPTHIVVNPVAGTPTATRLHTQYSHRYAGTPAYLVAPKLEYRGDTFEATL
RGSYSRSEFNFRDNSKGFFQRTDSYLTRIGFTLDRASEDSNAWTLAQTAGRPWGDPRSFN
RDDDIGNNIRTAESDAVNEMFGVNLDLKERFEIGGVPMTLMAGAAARTNDWRTNEGSWNQ
FQYVGPTGDLTQKAPEAVIPWTQHYKFQIHGFDAGNMNAQGWRADSNYAMYDIYKDHPEY
FVPDTLGNLKRDLDNNKRVKEDIYAGYLELQARAGRASFDLGVRYERTRTGARIANIRPL
SEVAAAGYPVSATAATTVEGLLYQYNGGTYATRRGDYEDWFLSGGVKYDFTDKLVAQVSF
SQSILRPDYGNLGGVVSVNDDTMIVNVPNPMLKPEHSTKYFARLQYFLEPSGIVAISAYK
LDIKDMQVTGITVNPEDVGYDPNEYVGYTFRSAQNAPGTSTNNGLILEYDQQLTFLPGAL
KGLGLRASFTLVDPDGVRQNLPERAANWGLRYSRGPFDFQLTGNWQSSYRISALGNTPTT
ANNGILYRAERELWNISASYKVTRNFEVMLAGRNIFNAPDIVYSNERSRVQQYSIYGSMW
NVGIKGTF