Protein Info for Ga0059261_0548 in Sphingomonas koreensis DSMZ 15582

Annotation: Gluconate 2-dehydrogenase subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: None (inferred from 34% identity to cak:Caul_4605)

MetaCyc: 31% identical to D-glucoside-3-dehydrogenase translocation subunit (Agrobacterium fabrum)
GLUCOSIDE-3-DEHYDROGENASE-RXN [EC: 1.1.2.11]; 1.1.2.11 [EC: 1.1.2.11]; 1.1.2.11 [EC: 1.1.2.11]; 1.1.2.11 [EC: 1.1.2.11]; 1.1.2.11 [EC: 1.1.2.11]

Predicted SEED Role

No annotation

MetaCyc Pathways

sucrose degradation VII (sucrose 3-dehydrogenase) (2/4 steps found)
lactose degradation II (1/3 steps found)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.2.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8Q7 at UniProt or InterPro

Protein Sequence (189 amino acids)

>Ga0059261_0548 Gluconate 2-dehydrogenase subunit 3 (Sphingomonas koreensis DSMZ 15582)
MINRRTALAGVTAMFGASLYAPLARAAGAPRGADIPAISEGPPSVRVFTPVQRAAMSALS
DRVIPATDTPGAIAAGVPDFIEKMLADWALPGDRVPIIAGLDAIEARSLRDHGVSAAKAT
AEQLDALLTLAMNRQLPGADAFFEPFRQLVIVGYYTSEIGMTQEREYLPVPGEYNGEFLY
SQINKVYSA