Protein Info for Ga0059261_0545 in Sphingomonas koreensis DSMZ 15582

Annotation: Bacterial Ig-like domain (group 3)/Putative flagellar system-associated repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1902 PF17936: Big_6" amino acids 172 to 250 (79 residues), 55.5 bits, see alignment (E = 3.6e-18) amino acids 254 to 333 (80 residues), 43.4 bits, see alignment (E = 2.1e-14) amino acids 337 to 415 (79 residues), 42.9 bits, see alignment (E = 3.2e-14) amino acids 447 to 515 (69 residues), 37.5 bits, see alignment (E = 1.5e-12) amino acids 551 to 619 (69 residues), 37.5 bits, see alignment (E = 1.5e-12) amino acids 655 to 723 (69 residues), 36.1 bits, see alignment (E = 4.1e-12) amino acids 759 to 827 (69 residues), 37.5 bits, see alignment (E = 1.5e-12) amino acids 863 to 931 (69 residues), 37.5 bits, see alignment (E = 1.5e-12) amino acids 967 to 1035 (69 residues), 36.1 bits, see alignment (E = 4.1e-12) amino acids 1071 to 1139 (69 residues), 37.5 bits, see alignment (E = 1.5e-12) amino acids 1175 to 1243 (69 residues), 37.5 bits, see alignment (E = 1.5e-12) amino acids 1284 to 1346 (63 residues), 29.9 bits, see alignment (E = 3.7e-10) PF19077: Big_13" amino acids 184 to 251 (68 residues), 38.3 bits, see alignment (E = 1.1e-12) amino acids 268 to 334 (67 residues), 29.3 bits, see alignment (E = 6.6e-10) amino acids 438 to 522 (85 residues), 60.7 bits, see alignment (E = 1.1e-19) amino acids 542 to 626 (85 residues), 60.7 bits, see alignment (E = 1.1e-19) amino acids 646 to 730 (85 residues), 61.4 bits, see alignment (E = 6.7e-20) amino acids 750 to 834 (85 residues), 60.7 bits, see alignment (E = 1.1e-19) amino acids 854 to 938 (85 residues), 60.7 bits, see alignment (E = 1.1e-19) amino acids 958 to 1042 (85 residues), 61.4 bits, see alignment (E = 6.7e-20) amino acids 1062 to 1146 (85 residues), 60.7 bits, see alignment (E = 1.1e-19) amino acids 1166 to 1250 (85 residues), 60.7 bits, see alignment (E = 1.1e-19) amino acids 1276 to 1354 (79 residues), 49 bits, see alignment (E = 5.1e-16) amino acids 1375 to 1459 (85 residues), 40.8 bits, see alignment (E = 1.7e-13) amino acids 1471 to 1560 (90 residues), 34.6 bits, see alignment 1.5e-11 PF00353: HemolysinCabind" amino acids 1731 to 1765 (35 residues), 12.5 bits, see alignment (E = 7.8e-05) amino acids 1748 to 1783 (36 residues), 26.6 bits, see alignment (E = 3.1e-09)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8V9 at UniProt or InterPro

Protein Sequence (1902 amino acids)

>Ga0059261_0545 Bacterial Ig-like domain (group 3)/Putative flagellar system-associated repeat (Sphingomonas koreensis DSMZ 15582)
MEKRIEITPRKAGAVEAHLVQQKNATIPIEDAARIKVTAARSELAEMVREGDDLILRFVD
GTTVRLDRYFNCPAETIPEVVFVEPGEGGQWRAALSERSCHLPTDNSVEALGYSFEPLSS
GAAAGGGLSGGLLAGLGALLVGGGVAAAAGGGGGGGGGGSNPGGPPVDTTPPAAPTVAPT
NGRELTGTAEAGATIRIDVNGDGSVDGTTTANASGNWTFTPTTALANGVTVRVTAADAAG
NVSPPTTVTVDAAAPAAPVINPTNGSVIAGTAEAGATVRLDLNNDGTVDATVTANGTGNW
TYTPATPVANGTTVTATATDAVGNVSPPGSVVVDRLAPPAPTINPSRGDVLTGTAEAGAT
VRLDLDGDGDVDATATANGSGNWSYTPASPIPNNTTVIATAADAVGNVSPPASIVIDSLA
PAVPTIGDIADNVGAVLGSVSNGGVTDDTTPTLSGTGAEANATITIYNNGTAIGTTTADG
AGAWSFTPAALPPGAHSFTVSATDAAGNASAQSAAYAITIDTSVPAVPTIGDIADNVGAV
LGSVSNGGVTDDTTPTLSGTGAEANATITIYNNGTAIGTTTADGAGAWSFTPAALPPGAH
SFTVSATDAAGNASAQSAAYAITIDTSAPAVPTIGDIADNVGAVLGSVSNGGVTDDTTPT
LSGTGAEANATITIYNNGTAIGTTTADGAGAWSFTPAALPPGTHSFTVSATDAAGNASAQ
SAAYAITIDTSVPAVPTIGDIADNVGAVLGSVSNGGVTDDTTPTLSGTGAEANATITIYN
NGTAIGTTTADGAGAWSFTPAALPPGAHSFTVSATDAAGNASAQSAAYAITIDTSVPAVP
TIGDIADNVGAVLGSVSNGGVTDDTTPTLSGTGAEANATITIYNNGTAIGTTTADGAGAW
SFTPAALPPGAHSFTVSATDAAGNASAQSAAYAITIDTSVPAVPTIGDIADNVGAVLGSV
SNGGVTDDTTPTLSGTGAEANATITIYNNGTAIGTTTADGAGAWSFTPAALPPGTHSFTV
SATDAAGNASAQSAAYAITIDTSVPAVPTIGDIADNVGAVLGSVSNGGVTDDTTPTLSGT
GAEANATITIYNNGTAIGTTTADGAGAWSFTPAALPPGAHSFTVSATDAAGNASAQSAAY
AITIDTSVPAVPTIGDIADNVGAVLGSVSNGGVTDDTTPTLSGTGAEANATITIYNNGTA
IGTTTADGAGAWSFTPAALPPGAHSFTVSATDAAGNASAQSAAYAITIDTSAPPVPLIDS
IVDNVGPILGTVLTGGTTDDTLPTLNGSGAEANATITIYDNGVAIGTTTADGAGNWSFTP
GSPLASIAHSFTVSSTDAAGNSSVQSAAYTITIDAIPPAAPAITSVTDNIGSVIGSVANG
GFTDDTIPVLAGTGAEPNGLVRIFDNGVLIGTTTANGAGAWSFTPGAPLTEASHSFTVTT
RDAVGNESLPSAAHVITVDLTAPTATIAITGISDDTGALGDWQTDDTSPTISGTLSAALG
ASERVEISLDGGATWAQATVSGTTWFHGPGTIGLGAHNISVRVIDAAGNIGNSANQAITV
TNVNVGPIVQATSASLLGLISAEALGLLDLSGQSLVAVDPDGNLSSVVVRYAPLLALNLG
AYTLTGSAQLAAELGLQVNIVNDPGVLGLIAPTSTMTITKLGGGAIDNLAINEFLKSVHF
NQDLTLVGLQVLGSTTITGTDTDGVSSTSAVGTLLDLSLINMNGNPTLIEGDVSANTLNG
SALNERIYGYGGGDILHGGGGTDLIRGGAGADEIYGDGGNDVLIFDAADVIIDGGTGTDI
LLMDSGTGLVATIDAATNIRNIESIHLGSGDGGRSIAIDEAGVLAATDSNRQLIVTGESN
DSVSLTGAVYQGQTLINGHAYNQYVLGSVTVIVEDAVVVIVI