Protein Info for Ga0059261_0540 in Sphingomonas koreensis DSMZ 15582

Annotation: Sulfotransferase family/Tetratricopeptide repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 526 PF13432: TPR_16" amino acids 18 to 72 (55 residues), 22.3 bits, see alignment 1.1e-07 amino acids 79 to 142 (64 residues), 34.7 bits, see alignment E=1.5e-11 PF13429: TPR_15" amino acids 41 to 167 (127 residues), 28.5 bits, see alignment E=7.2e-10 PF14559: TPR_19" amino acids 54 to 116 (63 residues), 37.9 bits, see alignment E=1.3e-12 PF12895: ANAPC3" amino acids 55 to 133 (79 residues), 29.4 bits, see alignment E=5.6e-10 PF13469: Sulfotransfer_3" amino acids 283 to 465 (183 residues), 146.4 bits, see alignment E=1.1e-45

Best Hits

KEGG orthology group: None (inferred from 67% identity to nar:Saro_1675)

Predicted SEED Role

"TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8Q1 at UniProt or InterPro

Protein Sequence (526 amino acids)

>Ga0059261_0540 Sulfotransferase family/Tetratricopeptide repeat (Sphingomonas koreensis DSMZ 15582)
MAATRFPPDLMDAALALHDNRLSEAERGLKAYLKRDPFDARAIRMLAELAGRIGRLKDAE
TLLRRAVELAPGFTAARSNLALVLYRQNRAEEALTELDALIDAEPDHPGHANLKAAALGR
LGAFEEAIALYERVLTEAPEQPKLWMSYGHMLKTVGRQADGIAAYRRAIALRPALGEAWW
SLANLKTVRFDDTDIAAMEAARAAPDLGEEDRFHLDFALGKAFEDRGDADRAFGHYADGN
ALRRTQLVYDADETERFVDDCIALATPAFFAERSGWGSEARDPIFILGMPRAGSTLIEQI
LASHSAIEGTTELPDLPALARRIPDYPHGLAGLTEGRARELGEEYLHRTAVQRRSDRPFF
IDKLPNNWAHVVLIRLILPNAVIIDARREPRACCFSNFKQHFARGQAFSYALDDMGRYYR
DYVRLMAHLDRVQPGRVHRVIHEALVADTEQEVRRLLDACDVGFEPACLAFYETERAVRT
ASSEQVRQPIFTGGDRAWRPFAPHLAPLAAALGDVADYYPDVPDTL