Protein Info for Ga0059261_0471 in Sphingomonas koreensis DSMZ 15582

Annotation: Uncharacterized protein involved in copper resistance

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF05275: CopB" amino acids 120 to 326 (207 residues), 295.8 bits, see alignment E=8.7e-93

Best Hits

KEGG orthology group: K07233, copper resistance protein B (inferred from 53% identity to bsb:Bresu_1663)

Predicted SEED Role

"Copper resistance protein B" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W8K8 at UniProt or InterPro

Protein Sequence (326 amino acids)

>Ga0059261_0471 Uncharacterized protein involved in copper resistance (Sphingomonas koreensis DSMZ 15582)
MKYLAVLMLAALPAPALSAQEVDHSGHAKPVDNMSPTTDPHAGHSTSAADDGHVGHPMPT
TNDPHAGHAMPGQRSDPPVAGPSAAARGGPAHATDAFYGEEEMVRSRRLLIKENGALNAG
QILIDQLETTIGKGTETYSWDAQLWYGGDINRLWLKTEGEGRFDGRGPDDVEVQALYSRA
LDPWFNLQVGVRRDFRAGPERTYAVVGIQGLAPYWFEVDGSLFLSDKGEVSARFEAEYDQ
RITQSLILQPSVEFELSAQDIPELGIGSGLSSAEAGLRLRYQIVPEFAPYIGVTYERAFG
NTADFTRAAGGKAGGWNFLVGLRSWF