Protein Info for Ga0059261_0267 in Sphingomonas koreensis DSMZ 15582

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 31 to 55 (25 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details PF04226: Transgly_assoc" amino acids 34 to 85 (52 residues), 44.7 bits, see alignment E=6.3e-16

Best Hits

Swiss-Prot: 36% identical to YMGE_ECO27: UPF0410 protein YmgE (ymgE) from Escherichia coli O127:H6 (strain E2348/69 / EPEC)

KEGG orthology group: None (inferred from 74% identity to nar:Saro_3185)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W834 at UniProt or InterPro

Protein Sequence (89 amino acids)

>Ga0059261_0267 Predicted membrane protein (Sphingomonas koreensis DSMZ 15582)
MINLIVLLVVGGVLGWLASIVMRTDAQQGMFLNIVVGIVGAVLAGLLITPLIGGATITQE
FSLTSLLVSFLGAVVLLGIVNLVRRGSVR