Protein Info for Ga0059261_0252 in Sphingomonas koreensis DSMZ 15582

Annotation: SpoIIAA-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF11964: SpoIIAA-like" amino acids 12 to 119 (108 residues), 57.1 bits, see alignment E=1.3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2M8W7W7 at UniProt or InterPro

Protein Sequence (129 amino acids)

>Ga0059261_0252 SpoIIAA-like (Sphingomonas koreensis DSMZ 15582)
MLTFTPLSPRAIAIIAEGHFTAADIVPALDRLAAILDTTPQLDILADVRGSPSVALSAIA
EELKHLPLLIRLIRAIDRVAIVADAEWVRVASRIESALIPGVHYEVYERKDEAHARAWLL
RETDRPRPD