Protein Info for Psest_1007 in Pseudomonas stutzeri RCH2

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 104 to 112 (9 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details amino acids 278 to 296 (19 residues), see Phobius details PF03547: Mem_trans" amino acids 3 to 131 (129 residues), 33.5 bits, see alignment E=8.9e-13 amino acids 153 to 294 (142 residues), 53.1 bits, see alignment E=9.8e-19

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 94% identity to psa:PST_3285)

Predicted SEED Role

"Auxin Efflux Carrier"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHV9 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Psest_1007 Predicted permeases (Pseudomonas stutzeri RCH2)
MVVVLAILPIFGLISLGYLFGWRQWLGNEGAAGLASVTFKLFMPAVLFSGIARAELSDGM
SPMLLLAYFVPVLLVFLLVNAIAHQRAGRATPLGLTAAYSNNVLVGIPLVTTLLGAESLV
YVFAILVFHSLVLFSLQSFYAALGDGDKVSVPALLKNLANPLIIGLLLGALLNVSGLELP
EPLWRVAGWLAQAALPCALMVLGISLSRYRLRPSGSVLLLTLIKLALFPALVWWLSGLLP
GLNADARNVLVLLAACPSGVNVLAFVKHSEDTRAVSSTVFLSTVMAVISLPLWMLLASS