Protein Info for PGA1_c09850 in Phaeobacter inhibens DSM 17395

Annotation: S1 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 PF09371: Tex_N" amino acids 11 to 193 (183 residues), 229.1 bits, see alignment E=1e-71 PF16921: Tex_YqgF" amino acids 322 to 449 (128 residues), 173.6 bits, see alignment E=6.9e-55 PF14635: HHH_7" amino acids 463 to 554 (92 residues), 41.1 bits, see alignment E=5.8e-14 PF12836: HHH_3" amino acids 489 to 553 (65 residues), 98.8 bits, see alignment E=4.8e-32 PF17674: HHH_9" amino acids 559 to 628 (70 residues), 80.5 bits, see alignment E=4.1e-26 PF00575: S1" amino acids 647 to 718 (72 residues), 76.1 bits, see alignment E=6.9e-25

Best Hits

KEGG orthology group: K06959, uncharacterized protein (inferred from 82% identity to sit:TM1040_0703)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DZ14 at UniProt or InterPro

Protein Sequence (788 amino acids)

>PGA1_c09850 S1 domain-containing protein (Phaeobacter inhibens DSM 17395)
MDTSARISQTIATEIGAAAKQVSAAVVLLDEGATVPFVARYRKEATGGLDDTQLRRLAER
LEYLRELEKRRAAILESVKSQDKLTDALATSIAKAETKAQLEDIYLPYKPKRRTKAMIAR
ENGLEPLADTILADRTADPEALAQDYITEAVATAKDALNGARDILTERLTESAALLGRLR
MFLQKEAVVTAKVIEGKEQEGAKFSDYFHHTERWADVPSHRALAMLRGSNEGVLTLDVGP
EPEEGVARAEAMVAAELGAGGNAPGDIWLRKVAGWTWRVKLSLSMMLELMGDLRGRAQED
AIQVFARNLKDLLFAAPAGARPTLGLDPGIRTGVKAAVVDATGKLVATETLYPFQPKNDL
RGAQVSIVKLIAEHGVELIAIGNGTASRETERMVAEVLKHLPAKVKAPTKVVVSEAGASV
YSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQHKLSKS
LEAVIEDVVNAVGVDLNMASAPLLSHVSGLGPGLAEAIVAHRDVNGAFASRRELLKVARL
GPKAFEQCAGFLRIREGKEPLDASSVHPESYDVARKIVAACGRDIRQIMGDGAALKSLRA
EEFVGGEVGLPTVRDIFEELEKPGRDPRPSFVTASFKDGVETITDLKPGMVLEGTVTNVA
AFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVTEVDVPRKRIALTMKKD
GGASAKEERTARGPAKGAGTRQGGKPASGRGKGTGQNARQNSGQNRGQNTGQNPGALGAA
LMDAFKKR