Protein Info for PGA1_c09810 in Phaeobacter inhibens DSM 17395

Annotation: DnaJ-class molecular chaperone with C-terminal Zn finger domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 PF00226: DnaJ" amino acids 151 to 203 (53 residues), 40.1 bits, see alignment E=1.6e-14

Best Hits

KEGG orthology group: None (inferred from 88% identity to sit:TM1040_0645)

Predicted SEED Role

"FIG003437: hypothetical with DnaJ-like domain" in subsystem Conenzyme B12 related Hypothetical: Clusters with cobST

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EXU7 at UniProt or InterPro

Protein Sequence (207 amino acids)

>PGA1_c09810 DnaJ-class molecular chaperone with C-terminal Zn finger domain (Phaeobacter inhibens DSM 17395)
MTKSDPFGFDMSIRSAKKKNPRGRRAATGASETSQRVCDKEGCNEPGKFRAPKAPDVLDD
FFWFCQEHVREYNNKWNFFEGTTEAELNAQQSKDKVWERQTKPMGDPEARAWARLGIEDP
HQVLGQNATRNPGRSAPAGRRLPPTERRALEVLEAKDDWSKADIRKAYKKLIKVLHPDMN
GGDRSQEEQLQEVVWAWDQIKDSRSFK