Protein Info for PGA1_c00940 in Phaeobacter inhibens DSM 17395

Annotation: putative methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 PF13489: Methyltransf_23" amino acids 32 to 173 (142 residues), 39.8 bits, see alignment E=1e-13 PF03848: TehB" amino acids 44 to 181 (138 residues), 23.4 bits, see alignment E=8.9e-09 PF13649: Methyltransf_25" amino acids 46 to 134 (89 residues), 47.5 bits, see alignment E=6.1e-16 PF08242: Methyltransf_12" amino acids 47 to 135 (89 residues), 38.5 bits, see alignment E=4.1e-13 PF08241: Methyltransf_11" amino acids 47 to 138 (92 residues), 42 bits, see alignment E=3.1e-14

Best Hits

KEGG orthology group: None (inferred from 55% identity to sil:SPO3211)

Predicted SEED Role

"Methyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EVL9 at UniProt or InterPro

Protein Sequence (199 amino acids)

>PGA1_c00940 putative methyltransferase (Phaeobacter inhibens DSM 17395)
MSEPDRTTLEIYNRKASDYADRNEIHLRQDPRLEEFIAACPPGGQVLDLGCGPGTSSAVM
ASAGLRPLAMDASAEMIALADQLSGVQTQLASFDELTGIDIYDGVWANFSLLHASRADFP
RHLRAIRQALRSGGPFYIALKLGKGEARDALGRLYTYYEDNELKDLLRSAGFTPTNSTTG
ESVGLDGSMARWISVACHG