Protein Info for HP15_879 in Marinobacter adhaerens HP15

Annotation: short-chain dehydrogenase/reductase SDR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00106: adh_short" amino acids 1 to 185 (185 residues), 149.8 bits, see alignment E=1.7e-47 PF08659: KR" amino acids 2 to 154 (153 residues), 38.1 bits, see alignment E=3.8e-13 PF13460: NAD_binding_10" amino acids 5 to 179 (175 residues), 29.8 bits, see alignment E=1.3e-10 PF13561: adh_short_C2" amino acids 5 to 210 (206 residues), 118.5 bits, see alignment E=9.1e-38

Best Hits

KEGG orthology group: None (inferred from 67% identity to psa:PST_1446)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PET8 at UniProt or InterPro

Protein Sequence (224 amino acids)

>HP15_879 short-chain dehydrogenase/reductase SDR (Marinobacter adhaerens HP15)
MLITGASSGIGAETARAAAKQGYRLVLAARSEDKLKGLQQELGGEEKVLTVQCDVQSGDD
QKNMVDQALKTFGRIDAVFANAGRGGEPGGFSGADPDVWKDMILTNIYGVGLTLQHCMPA
LKESKGHLLLTGSAAGRATIPGSMYSATKWAVTAIGYGVREELRGSGIRVTLIEPGMVDT
PFFDERPGHALKPEDIANAVMYAVAQPAHVDVNEILVRPTPKVE