Protein Info for Psest_0918 in Pseudomonas stutzeri RCH2

Annotation: Predicted permease, DMT superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 120 to 136 (17 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details PF00892: EamA" amino acids 7 to 137 (131 residues), 64.4 bits, see alignment E=7.1e-22 amino acids 145 to 278 (134 residues), 56.6 bits, see alignment E=1.8e-19

Best Hits

KEGG orthology group: None (inferred from 40% identity to fjo:Fjoh_3301)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJE7 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Psest_0918 Predicted permease, DMT superfamily (Pseudomonas stutzeri RCH2)
MPVRQTYLCLLILGTAFWGISFAFTKVGVADGSPFVFLGYKFALATLVLCVIFFRRLKLI
NKETLLAGVAIGLPLCLGNIFQTVGLQHTSITNTAFITGLDVLLIPVFKWALFRKRVEPR
IWLCCAVALTGLYLIVTRAGLTLNPGDIWIMCCAVFFAAYVLTVGFFSHKYDSMLTVITA
LATCATGCLFAALFDARAEWAPMDSSFWEGVLFCALLATAFMYAVQSAAQKYLEEEKVAL
TYLFEPIFAAFAGAMLLGETLDGRTLAGTALIFSALLIAEIDVPKFLSRLLRALFAPWAR
RQ