Protein Info for PGA1_c08500 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13202: EF-hand_5" amino acids 40 to 57 (18 residues), 20.9 bits, see alignment (E = 5.7e-08) amino acids 62 to 81 (20 residues), 15.8 bits, see alignment (E = 2.4e-06) amino acids 94 to 112 (19 residues), 17 bits, see alignment (E = 1e-06) amino acids 121 to 139 (19 residues), 24.8 bits, see alignment (E = 3.4e-09) PF13499: EF-hand_7" amino acids 57 to 112 (56 residues), 32.3 bits, see alignment E=3.2e-11

Best Hits

KEGG orthology group: None (inferred from 53% identity to sil:SPO2757)

Predicted SEED Role

"EF hand domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EV15 at UniProt or InterPro

Protein Sequence (167 amino acids)

>PGA1_c08500 hypothetical protein (Phaeobacter inhibens DSM 17395)
MKHTKFIAAVIAVGAVIGATGAIAKPGLGGKGGHGPRMSFEEMDTNGDGQVTKAEMEGLR
EARFAAADSDGDGQLTLAEMEAAAQARAKTRAAAMLERMDADKDGALSLDELPKPRRMGK
MFDRVDANDDGAISKEEFESARAKFRGRHGAGHKPRGDMQGGEVEQN