Protein Info for HP15_808 in Marinobacter adhaerens HP15

Annotation: flagellar synthesis regulator FleN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF06564: CBP_BcsQ" amino acids 1 to 227 (227 residues), 40.6 bits, see alignment E=4.5e-14 PF13614: AAA_31" amino acids 2 to 146 (145 residues), 51 bits, see alignment E=3.4e-17 PF01656: CbiA" amino acids 2 to 209 (208 residues), 32.6 bits, see alignment E=1.4e-11

Best Hits

Predicted SEED Role

"Flagellar synthesis regulator FleN" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PR37 at UniProt or InterPro

Protein Sequence (417 amino acids)

>HP15_808 flagellar synthesis regulator FleN (Marinobacter adhaerens HP15)
MGKTSVALNLALTLARQDNRVLLLDGDTDLANVSIMVGLYPRKTLANVMAGECRLEDIIL
ETDYGLHIVPGASGVQECMDMGPTESLRILRALYNLENRYDYVITDTAAGLQAAGLHMIA
ATELACMVVTPDPASLTDAFSLIKVLRRRGYNRIPSILVNMAQGASQARSVFQRLDAAAQ
RHLGISLHYMGGIWRDETLRQSVLNQKPVALLPVSDPSCRQFHTLADMLDVRLSQLPRRK
AGIAAYWHKVSKRGSESPLKTVTKPEPETESEAHTLKDRCLQAVGEIESVFNAGPIDPML
RYEAFTRLFALLGSTLDSDAVEIVQTGLGSFQWESLSPERKNHLAIHLRELADQISPLEH
KAEPAEPPQSLLREPFYDRISFGEQDRLVRVLKEQPADISLDQLLRSLSGNDQGGSR