Protein Info for Psest_0817 in Pseudomonas stutzeri RCH2

Annotation: Ethylbenzene dehydrogenase.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF09459: EB_dh" amino acids 28 to 273 (246 residues), 110.6 bits, see alignment E=6.3e-36

Best Hits

Swiss-Prot: 97% identical to C552_PSEST: Cytochrome c-552 (nirB) from Pseudomonas stutzeri

KEGG orthology group: None (inferred from 96% identity to psa:PST_3530)

Predicted SEED Role

"Cytochrome c-552 precursor" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ33 at UniProt or InterPro

Protein Sequence (291 amino acids)

>Psest_0817 Ethylbenzene dehydrogenase. (Pseudomonas stutzeri RCH2)
MKKTLMASAVGAVIAFGAQSAMAAAPADWNSVAATDVTLFYPGVSPVEWITKGTEHGGAR
ALKKGETCAGCHSEEAGDMGAKMASGKKLEPSPIAGKAPFINAKVQAANDGENLYLRFTW
KQPAASGAAPMDADNPVKIAYMLEGGSKVELAEAGGCWGSCHGDARTMPGAADTKTKYVK
DGSLANGVYYDLNQWRSGENKAFDGYVATERVMEGGQALVDAQGQLDGDTWSVVFTRKFA
GGEGDVTLAPGNLYNFGFAIHDDSATGRYHHVSLGYTLGIDAQGDITAAKQ