Protein Info for Psest_0804 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1005 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 55% identity to vap:Vapar_2835)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHY5 at UniProt or InterPro

Protein Sequence (1005 amino acids)

>Psest_0804 hypothetical protein (Pseudomonas stutzeri RCH2)
MKKYFNRFLLALAVSLAQAASAEDIDLFVGVPSSSTGAPNVLIVLDNTANWNNAFSNEMA
ALRSVISALPEDKFRVGIMMFTETGGSNSGADGAYVRAALRPMDAANKIAMANLVTSFDK
LGDKSNGGKVSLAMQEAYLYFAGATPYAGNKKAKTDFAGNRGVSTAADAVYALPNNALAS
KDATSYLSPIVSGCGKNYVIYISNGPAQDNSSDITQATTALAGLGGSTTTIPITPSDSQD
NVADEWARFMKKSSEQITTYTIDINRTTNRQGLGWTALLQSMARTSDGKYFDVTSTGNQI
VDALNAIFSEVQATNSVFASVSLPVSVNAQGTYLNQVFIGMFRPDGDGFPRWYGNLKQYK
LGYIGSDLRLLDADGVSAINSNTGFITECARSFWTPTAADSYWGFSARGNCLTGADSSGS
NSPDGNIVEKGGQGYLLRASSSRNMLTCGTASGCTSLTSFSTTNNGITATALNAANETER
TAMINWARGVDLKDENGNGNVSEMRPSVHGDVVHSRPVAINYGTAGNPNVVAFYGGNDGA
LRAVVGNRTSALGTHAAGSELWSFMPPEFYGKIKRLYDNNVPISFPGYVGTSTPQPKDYG
MDGPVVAYQDESSAWIYATMRRGGRAVYAFNVNTPASPSLKWKRGCPNNFDANGAVVDTS
CSDGFSGIGQTWAPPKLLKASGYGNGTAPMLIMGGGYDACEDGDPHTCTDATKGNKVYVL
DADSGELLRTFDTQRSVISDVTLVRNSAGQALYGYLADLGGNVYRITMGASAPLQWTMTR
IAALGCATAGTCTRNRKFMFAPDIVADGADYVLMLGSGDREKPLLDYDDAAATTNYFFML
RDRPSDSTWLTSEASNCGGNLLCMNSLLGVTTQSAPTTTSLGQKKGWYLQLDATEQVVTS
AITVFGDVTFSTHQPRVPTSGVCSGLGETRVYTVNYLTGQGVYHDVVGDGLPPSPVAGMV
TLDDGVTTVPFVIGADPSSPLQGSPPINPASVMQPTSRVFWNIEQ