Protein Info for Psest_0778 in Pseudomonas stutzeri RCH2

Annotation: Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF05721: PhyH" amino acids 15 to 201 (187 residues), 70 bits, see alignment E=1.9e-23

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_3565)

Predicted SEED Role

"Phytanoyl-CoA dioxygenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GH89 at UniProt or InterPro

Protein Sequence (253 amino acids)

>Psest_0778 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin (Pseudomonas stutzeri RCH2)
MPESSDLQQQLAALHQQGFVLLPAVVDPPTITELRDAIDRLEPIHWDYQGLVDDHFKCVF
NRSPFWLRFLDLPGVIELAEAALGADCHIIGQTAWRSRPGFIGGELHSDHLAMELPESLL
ADPAFELPMQICTAHLYLDDIDADLCPTLVIPGSHRAGRKPRPSETQWHGRAPEPVLCKA
GDLLLFRSDLWHAGSRNRTAERSRYLLQIHYGRRMVAQKFSPYLHFSFNPEVLAAATPRQ
RRLLGEHEAAEYD