Protein Info for Psest_0751 in Pseudomonas stutzeri RCH2

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 365 to 384 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 4 to 182 (179 residues), 22.8 bits, see alignment E=4e-09 PF07690: MFS_1" amino acids 233 to 380 (148 residues), 42.5 bits, see alignment E=4.2e-15

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_3594)

Predicted SEED Role

"Major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ44 at UniProt or InterPro

Protein Sequence (393 amino acids)

>Psest_0751 Arabinose efflux permease (Pseudomonas stutzeri RCH2)
MHLLFSNPQVLRLFIAQALFWSCSMTGIIFTSIVGLRLAPAAGLATLPLALLMLGGLLAL
QPLAGLMQRCGRRAGFLIGALAGVLGGLISALSLWLDSFTLLCLGALPIGAYQASAMYYR
FAALEAVSEAFKGRATACVIGGGVLAALIAPTLGHMARDLASVPFAGTYLLIASLAALGV
LVLAGLPASSGTPGDQTALPAVSWQTLLARPTIRAAVLTTAAGHGLMILVMNATPLAMHG
EGLDLQASGQVIQWHMLGMFLPAFVAGLLVDRFGCRLVACLGGGLLIVSAVVALLGISHW
HFLLSSCLLGIGWNLMLVAGTTQLGQGHAASERARAQGLMELSNGSVAAAMSFASGALIA
QAGWAAVNIGLLPIVTLVVLLQVAQGYRQRQAA