Protein Info for Psest_0733 in Pseudomonas stutzeri RCH2

Annotation: Cation/multidrug efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1014 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 334 to 352 (19 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 386 to 411 (26 residues), see Phobius details amino acids 432 to 452 (21 residues), see Phobius details amino acids 458 to 482 (25 residues), see Phobius details amino acids 521 to 541 (21 residues), see Phobius details amino acids 854 to 874 (21 residues), see Phobius details amino acids 881 to 900 (20 residues), see Phobius details amino acids 906 to 927 (22 residues), see Phobius details amino acids 956 to 976 (21 residues), see Phobius details amino acids 983 to 1005 (23 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1005 (1002 residues), 518.9 bits, see alignment E=1.3e-159

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_3618)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GH41 at UniProt or InterPro

Protein Sequence (1014 amino acids)

>Psest_0733 Cation/multidrug efflux pump (Pseudomonas stutzeri RCH2)
MDFARYSITRPVNIWILVLICLFGGILAFFEIGRLEDPEFTIKQAIVNVQYPGATALEVE
QQVTEPLESAIQQMSQIKEIRSRSMPGIAEIRVEMQDRYAGDALPQIWDELRNKINDAQG
DLPPGIEPPQVNDDFGDVYGIFYALTGDGLTLKELHETAKDLRRALLTADGVGKVEIAGV
QEERILVEVDQAQLAALGVAPDEIAAALADTDAAVDAGGVNAGEFFVRLRPSGAFDSLEE
LRALPVGQGPQRVELGAIARLSREYAERPQQIIRHNGQQALTLGISGVSGANIVEVGHSV
EAVLQANEHRMPLGADLHPLYEQHQIVDESVNSFALNVFLSVAIVVGVLCIAMGLRAGFI
IGAVLFLTVLGTLLVMWLVGIELERISLGALIIAMGMLVDNAVVVCDGMLVRQRQGKSIL
EASQQTLRQTQWPLLGATIIGILAFAGIGLSQDTTGELLFSLFFVIAVSLLLSWLLALLL
VPLFGHYLLRNADTDEDPDAAYNGPWYNRYRRLAGGVLHRPWLTIGVLLVLTVVSAVIFT
RLPQSFFPPSSTPLFYVNLFLPQGTHIRDTARTASDVEEYLAEMEGVSGVSSFIGAGASR
FMLTYMPEQPNSSLMHFLVRTEDAELIDRLVRQINQELPQRYPSADVTAAQFMFGPNAEA
KLEARISGPDIEVLRAISAEGRKRLQDEGKVFNVRDDWRQPVLVLRPQLALDRLADAGLT
RQAVARALAAGSEGQRVSLLRERDELIPVLLRAAPEDRVSSDDLLQRLIWSPAGNGYVPL
AQVADGIEPTSEDSIIVRYDRERTISIRAEPRDGENTNEAHQRIRPLIEGIELPVNYSLK
WGGDYEQSSDAQQALASTLAVPYLAMVLVTVLLFARVRQPLMIWLVVPMAICGVSFGLLL
TGQAFGFMALLGLLSLTGMLIKNAVVLVDEIDRQIDDEVPRLTAIIEASASRLRPVMMAA
GTTVLGMVPLLFDPFFANMAVTIMGGLGFATLLTLLAVPCLYLLFMKVRPEETA