Protein Info for PGA1_c00720 in Phaeobacter inhibens DSM 17395

Annotation: ATP synthase C chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 74 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 48 to 73 (26 residues), see Phobius details PF00137: ATP-synt_C" amino acids 8 to 70 (63 residues), 42 bits, see alignment E=4.4e-15

Best Hits

Swiss-Prot: 97% identical to ATPL_RUEST: ATP synthase subunit c (atpE) from Ruegeria sp. (strain TM1040)

KEGG orthology group: K02110, F-type H+-transporting ATPase subunit c [EC: 3.6.3.14] (inferred from 97% identity to sit:TM1040_2593)

MetaCyc: 40% identical to ATP synthase Fo, c subunit (Synechococcus elongatus PCC 7942 = FACHB-805)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EI92 at UniProt or InterPro

Protein Sequence (74 amino acids)

>PGA1_c00720 ATP synthase C chain (Phaeobacter inhibens DSM 17395)
MEGELAHIGAGLAGMGTGIAALGVGNVAANFLAGALRNPSAAASQTATLFIGIAFAEALG
IFSFLVALLLMFAV