Protein Info for Psest_0678 in Pseudomonas stutzeri RCH2

Annotation: yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 TIGR00197: YjeF family N-terminal domain" amino acids 11 to 207 (197 residues), 135 bits, see alignment E=2.7e-43 PF03853: YjeF_N" amino acids 31 to 189 (159 residues), 148.1 bits, see alignment E=2.5e-47 TIGR00196: YjeF family C-terminal domain" amino acids 227 to 488 (262 residues), 223.2 bits, see alignment E=4.1e-70 PF01256: Carb_kinase" amino acids 247 to 480 (234 residues), 212.4 bits, see alignment E=7.1e-67

Best Hits

KEGG orthology group: None (inferred from 88% identity to psa:PST_3673)

Predicted SEED Role

"NAD(P)HX epimerase / NAD(P)HX dehydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGY2 at UniProt or InterPro

Protein Sequence (496 amino acids)

>Psest_0678 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region (Pseudomonas stutzeri RCH2)
MTDSLPVALYTAAQVRELDARLIAAGTPGFELMQRAAHAAWRALRRRWPDAGAVTVLAGR
GNNAGDGYLLAALAQRAGWQVRVLAVGDPQALQGDAALALTEAQACGVAIEPWHAEVPLQ
GVLVDALLGTGLAGEVREPYAAAIEAINVSELPVLAIDLPSGLCADSGRVLGHAVRADLS
VTFIGLKLGLFTADGPDRVGTLVFDDLQADPAIVAQVASEAVRLDHGSLARVAPRSATAH
KGSFGQVLVIGGDLGTGGAVLLSAEAALRCGAGMVTLATRPEHITASLVRCPEIMCSGVE
STYGLTALADRADVLVVGPGLGQAPWGRSLLSLTAQRDLPQVWDADALNLLANGAVELPA
GSLITPHPGEAARLLQCSVAEVQADRPAAVRALAQRYACVALLKGAGTLIAAPDGRLALC
DRGHPSMASAGLGDVLAGVLGALLAQGLAPFDAACLGAWLHAAAGERIGQQGRGLAASDL
IPVIRQLLEEQSPCLK