Protein Info for PGA1_c06660 in Phaeobacter inhibens DSM 17395

Annotation: glycosyl transferase-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 646 transmembrane" amino acids 184 to 201 (18 residues), see Phobius details amino acids 207 to 231 (25 residues), see Phobius details amino acids 525 to 547 (23 residues), see Phobius details amino acids 566 to 588 (23 residues), see Phobius details amino acids 595 to 617 (23 residues), see Phobius details PF05157: MshEN" amino acids 76 to 162 (87 residues), 43 bits, see alignment E=9.4e-15 PF13641: Glyco_tranf_2_3" amino acids 269 to 497 (229 residues), 101.7 bits, see alignment E=1.7e-32 PF00535: Glycos_transf_2" amino acids 272 to 445 (174 residues), 44.4 bits, see alignment E=4.5e-15 PF13506: Glyco_transf_21" amino acids 329 to 495 (167 residues), 25.7 bits, see alignment E=1.8e-09 PF13632: Glyco_trans_2_3" amino acids 358 to 550 (193 residues), 94.3 bits, see alignment E=2.3e-30

Best Hits

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DMQ3 at UniProt or InterPro

Protein Sequence (646 amino acids)

>PGA1_c06660 glycosyl transferase-like protein (Phaeobacter inhibens DSM 17395)
MAEHNLRLIDAARPLIRRERQTSFERRLVEHHAVSKDHLMRALVLRQHQRVPIDHILVSE
GWASQEQVLDALSSEHGMQRVDLGGHRPQARLLARKPARFWLRRCALPYMQLGQTLVVAI
AHPAGLAELQRDLAESFGDIRPVIASEAQITELLTAHFRDDLARHASACVPLTYSCRTLG
QPNWLGLPLIIGLATLALVTIMPRVVFTLLCGLALLTLLLFVLLKCAGFLSHLQDRRRQR
LHQRARPHPNTPLRSDQVLGVPTTQRRLPRISVLVPLYKEAEIGRALLRRLCKLTYPRSL
LEVLLVLEEDDEVTRNAIRCADLPEWFRVIEVPAHGGLTTKPRAMNYALNYCRGEIIGVW
DAEDAPEPDQLEQVASAFALGDNDLACLQGALDYYNPGQNWISRCFTLEYASWFRIVLPG
IARLGLVVPLGGTTLFIRRDVLEQLGGWDAHNVTEDADLGVRLCRLGYRTEMLPTTTYEE
ANCRPWAWVKQRSRWLKGFMVTYLVHMRRPIVLAQQLGWRQFLGLQAFFLGTVGQFLLAP
CLWTFWLITLGFDHPSTPLLPAGAPYLAAAVLVFFELLGITIGITAAFASGRRWLALWTP
SMILYFPMGVIAVYKALYELIFKPFFWDKTAHGQSQKQPKTPLPRT