Protein Info for Psest_0664 in Pseudomonas stutzeri RCH2

Annotation: diguanylate cyclase (GGDEF) domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 281 to 304 (24 residues), see Phobius details PF02743: dCache_1" amino acids 36 to 257 (222 residues), 52.2 bits, see alignment E=6.1e-18 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 322 to 486 (165 residues), 156.1 bits, see alignment E=3.4e-50 PF00990: GGDEF" amino acids 325 to 482 (158 residues), 143.5 bits, see alignment E=5.1e-46

Best Hits

KEGG orthology group: None (inferred from 77% identity to psa:PST_3687)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHK7 at UniProt or InterPro

Protein Sequence (496 amino acids)

>Psest_0664 diguanylate cyclase (GGDEF) domain (Pseudomonas stutzeri RCH2)
MNRKAGLLAALILVLALVPMWAFVFSEIRHERELMIGAARNDAMNLATAFEAHVQSTIRL
MDIVLLDMREDVLDNADFERHVREELQAYGSFVAQLAVIDKHGRLAFSNLESSVKPVDLS
DREHFRVHRDNPQEDRLFISKPVLGRVSKQWTIQFTRPIHQNGEFAGVLVLSVPTNFFAD
YYQQIDVGLHGAIALLGTDRSLRAIASGTPIAGRYGRFKVPADRPYVDPDAPVRGYYEGV
SSLDGEYRLGAYRRLTDAGVVVLVMLSPKDFMAAHEERKELLLASAGVISLLLLAVAVLV
FVLSSRYFQSTARLRQAHDQLAQFANTDVLTGARSRRAFFDGLDAELARARRHGDGLSLL
MLDIDHFKRVNDVHGHPAGDVVLKQFAVICAALLRGHDLFGRIGGEEFAIALPNTDLEGA
RCVAEKIRQAIAQAPVATTAGEISITVSIGLACTDGGQHEADYLIVQADRALYLAKHGGR
DQVYAAAPRPLESPRS