Protein Info for PGA1_c06610 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 77 to 99 (23 residues), see Phobius details amino acids 106 to 123 (18 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details PF13398: Peptidase_M50B" amino acids 15 to 211 (197 residues), 145.8 bits, see alignment E=7.3e-47

Best Hits

KEGG orthology group: None (inferred from 51% identity to jan:Jann_1655)

Predicted SEED Role

"expressed protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DMP9 at UniProt or InterPro

Protein Sequence (230 amino acids)

>PGA1_c06610 hypothetical protein (Phaeobacter inhibens DSM 17395)
MPFLRRVITGHWQLICLTLMIVLLWSTPAVLPLRILTVFLHETSHAIVTLATGGEVLNLT
IDPYEGGSVTSRGGNRFLTLSAGYTGSLFIGAALFVIALRTDWDRRILALFGALTLFVAA
LYIRDLFAFGFTLVTGAMMLATARYLSLAANDMTLRIIGISSMIYAPLDIWDDTIARSYL
RSDARMMAEDIGGTTVVWGGLWLAISLAVIGITLRYGLGKSSNISLRRKV