Protein Info for PGA1_c06500 in Phaeobacter inhibens DSM 17395

Annotation: glycyl-tRNA synthetase beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 754 TIGR00211: glycine--tRNA ligase, beta subunit" amino acids 3 to 512 (510 residues), 470.2 bits, see alignment E=8.1e-145 PF02092: tRNA_synt_2f" amino acids 4 to 609 (606 residues), 624 bits, see alignment E=2.8e-191 PF05746: DALR_1" amino acids 642 to 749 (108 residues), 41.9 bits, see alignment E=9.5e-15

Best Hits

Predicted SEED Role

"Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)" (EC 6.1.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.14

Use Curated BLAST to search for 6.1.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EX03 at UniProt or InterPro

Protein Sequence (754 amino acids)

>PGA1_c06500 glycyl-tRNA synthetase beta subunit (Phaeobacter inhibens DSM 17395)
MPDLLIELFSEEIPARMQARAAEDLKKRMTDGLVEAGLTYAGAHALSTPRRLTLAMEGLL
EHSPTVREERKGPKVGAPDKAIEGFLRGAGVTRDQLEERDTPKGAVYFALIEKPGRPAAE
IIAEVLEDTIRNFPWSKSMRWGTGSLRWVRPLQSILCILSKEDGAEVVPLNIDGIASGNT
TYGHRFMAPDQITVTGFDDYAAKLKRAHVVLDPAEREAAIRQEATNQAFASGLEVVEDKG
LLAEVAGLVEWPVVLMGAIDDEFLALPPEVLQTSMKEHQKFFSVRNPKTGRIEKFITVAN
RETADNGATILAGNQKVLSARLADAKFFWENDLRTVTEQGFEPWVAKLGNVTFHNKLGTQ
AARIDRIAALAREIAPVVGADADLAEQAARVAKADLSSEMVYEFPELQGLMGRYYAEAAG
LPQDVANACEAHYSPLGPSDDVPTEPVSVAVALADKLDTLTGFWAIDEKPTGSKDPFALR
RAALGVIRLVLENDLRLSIQPIYTQGIQSQQIVDQALELLLETRTKVQGIEETLADPNYQ
GSLISGTREALEKDLTAGRRELDKRESGYQTWNEMWEKAPADLLSFFHDRLKVFLRDQGI
RHDVIDACIAMEGNDDLTLLVKRARALEDFMASDDGPNLLQGFKRANNILAQAEEKDGVE
YSYGADKKFAEDDSEIALFDALASSEGAISSAIEAEDFAAAMGSMAALRAPVDAFFEAVQ
VNSDNEVVRRNRLNLLSQIRKVCGQVADLTRIEG