Protein Info for Psest_0647 in Pseudomonas stutzeri RCH2

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 41 to 60 (20 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 264 to 280 (17 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 253 (245 residues), 59.1 bits, see alignment E=1.8e-20

Best Hits

KEGG orthology group: None (inferred from 93% identity to psa:PST_3700)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GIK7 at UniProt or InterPro

Protein Sequence (384 amino acids)

>Psest_0647 Arabinose efflux permease (Pseudomonas stutzeri RCH2)
MTLRRALIGMTLLAVLGDSLLMPFYPQYFTERFGELRSEQVGLYLAAVCLVAMLALPLWV
RLSRHAHPLRLLIFGQLMAGLLALACAAIEQQWLFWPVSLTMIAFKASYLLMYPYVMGLV
GADQQVRTIGLLSVVVHLGAIAGATLGGGVLHYLSPARMFVLMGLMDFVQMAVSLLLLRH
APQPTRVDASTPPRPRGEHLAIARLCLLMLAFYFCIYLARPFFTVYWEQLGGPQASWITG
LVYAIPGMLALLALALHYHAGQRLTAWLLLGAAGLALQGIEQMPTVLAGRVLFGWALYQL
TVALDARLFALSRPEHYGRDYSLINIFQNLGVLAASWLAGLAVRDAGLAAPFFLSAIGLV
LTACVLRWLLVSAAARAPLCGAKS