Protein Info for HP15_607 in Marinobacter adhaerens HP15

Annotation: rare lipoprotein A family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF03330: DPBB_1" amino acids 88 to 177 (90 residues), 93 bits, see alignment E=1.1e-30 TIGR00413: rare lipoprotein A" amino acids 90 to 183 (94 residues), 142.6 bits, see alignment E=8e-46 PF05036: SPOR" amino acids 221 to 290 (70 residues), 49.3 bits, see alignment E=5e-17

Best Hits

KEGG orthology group: K03642, rare lipoprotein A (inferred from 70% identity to maq:Maqu_2411)

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PP59 at UniProt or InterPro

Protein Sequence (297 amino acids)

>HP15_607 rare lipoprotein A family protein (Marinobacter adhaerens HP15)
MNCKPSFSLLLSVVVSLVLGGCASAPETDHSSRYTLATDRAPSGNFDVSGLDDAIPVYEA
PRRAGNKSPYQVWGKQYHVLDSNDGYVARGTASWYGEKFHGHKTSNGETFNMYTMSAAHK
SLRIPGYARVTNLDNGRSVIVRVNDRGPFHSDRIIDLSYAAAKKLGYQARGTARVEVAAI
TVRPDGAMFIAGEPYSPGDPAGYAESRVEASGDMAMTNRSLFVQLGSFSSRDPAEKLLSQ
VRAVLENPMRVRAVDTSAGRFHRVQVGPFNDEDSARRTQSLLEARGFDQSILLTDTH