Protein Info for Psest_0627 in Pseudomonas stutzeri RCH2

Annotation: Superfamily I DNA and RNA helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF00580: UvrD-helicase" amino acids 7 to 59 (53 residues), 28.2 bits, see alignment 3.1e-10 amino acids 137 to 200 (64 residues), 24 bits, see alignment E=6e-09 PF13245: AAA_19" amino acids 7 to 201 (195 residues), 25.3 bits, see alignment E=3.1e-09 PF01443: Viral_helicase1" amino acids 147 to 368 (222 residues), 21.5 bits, see alignment E=3.6e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGT6 at UniProt or InterPro

Protein Sequence (394 amino acids)

>Psest_0627 Superfamily I DNA and RNA helicases (Pseudomonas stutzeri RCH2)
MPNELWVAGAGSGKTHKIITEAIETIKAGGRVLVVTYTTNNQAELRSRFVELYGASSEHF
VVKGLFSFYLEDMVRPYQSEVFPDRITTISFTENNPHLISGTTYYIEGRAEKSEDGTINP
LHYLTPCKTKAYSGFLAKLATLIAKLSKNAPAKRLKEIYQRVYFDEVQDLVGWDYDVIKS
LNKVMVDSICCVGDFRQTIYTTTFGHKAPQTPQQKVDYFVGKMKFEKHSMPKNRRCIQEI
CDLSDTIHLGLYDKTVTGVEKVPDEISHHHGTFIVKQSQVSDYLAAFQPQVLRWSSTTGT
GYLPGNLICYTFGSCKGLGFDRVLVIPSDKHLKFIGGNAKVFDKDKTEESRNKLYVAITR
ARYSLAFLVEDKKVKGLPYPIWDGSGALNAVIEK