Protein Info for PGA1_c05820 in Phaeobacter inhibens DSM 17395

Annotation: ribosomal protein L11 methyltransferase PrmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF06325: PrmA" amino acids 46 to 288 (243 residues), 186.8 bits, see alignment E=1.6e-58 PF05175: MTS" amino acids 145 to 225 (81 residues), 37.8 bits, see alignment E=3.7e-13 PF13847: Methyltransf_31" amino acids 149 to 243 (95 residues), 27.6 bits, see alignment E=5.8e-10 PF13649: Methyltransf_25" amino acids 152 to 244 (93 residues), 33.4 bits, see alignment E=1.5e-11 PF08241: Methyltransf_11" amino acids 154 to 225 (72 residues), 21.3 bits, see alignment E=8.7e-08

Best Hits

KEGG orthology group: K02687, ribosomal protein L11 methyltransferase [EC: 2.1.1.-] (inferred from 85% identity to sit:TM1040_2376)

Predicted SEED Role

"Ribosomal protein L11 methyltransferase (EC 2.1.1.-)" in subsystem Heat shock dnaK gene cluster extended or Ribosome biogenesis bacterial (EC 2.1.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.-

Use Curated BLAST to search for 2.1.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EUE1 at UniProt or InterPro

Protein Sequence (290 amino acids)

>PGA1_c05820 ribosomal protein L11 methyltransferase PrmA (Phaeobacter inhibens DSM 17395)
MPTFTALTTLTGKAPAEALGAAMERLTPEPTGLGVFEVEDGSGLWEVGGYFTETPDEAGL
ALLATMFDAQPFVISELPETDWVAHVRRELAPVEAGRFFVYGSHDADKLPADRIPLLIEA
AMAFGTGHHGTTLGCLKALDKLIEDGFVGEKVADIGCGTAVLAMAAARVWDGQILASDID
QVAVDVAEANLKANDMEGRVQCLEAAGFDAPALAEAAPYDLIFANILKGPLVALAPDVAA
HLRSDGYAILSGLLNEQADEVQGVYAQNGINLVQRSEIGDWTTLLLQKTG