Protein Info for Psest_0555 in Pseudomonas stutzeri RCH2

Annotation: Cytosine/uracil/thiamine/allantoin permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 transmembrane" amino acids 53 to 58 (6 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details amino acids 269 to 293 (25 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details amino acids 377 to 402 (26 residues), see Phobius details amino acids 431 to 450 (20 residues), see Phobius details amino acids 456 to 473 (18 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 24 to 462 (439 residues), 272.9 bits, see alignment E=2.4e-85

Best Hits

KEGG orthology group: None (inferred from 83% identity to pmk:MDS_1914)

Predicted SEED Role

"Hydantoin permease" in subsystem Hydantoin metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHC1 at UniProt or InterPro

Protein Sequence (490 amino acids)

>Psest_0555 Cytosine/uracil/thiamine/allantoin permeases (Pseudomonas stutzeri RCH2)
MNHDDFQIKQIDPSLYNADLAPLAPAERKWGWLEIFNVWSNDIQSLFGYTLAATLFISYG
LNGWAVLAGIMLAGFIVMGLVQLTGKPSVKYGIPFPVMARASMGVRGANFPAVVRGIVAI
FWYGVQTYFASTAVALLLRTLLGSEPQAATLLGLTAIDWAAYVIVCVFQVALFVRGVDWV
TRFLNWAGPLVYLVMIVLMIAIWYQAGPSLLGALGDIFSGSGEHAGGPIAAFAAVVGTMV
AYFAAVVINYGDFARFVKSERQMRIGNFLGLPVSLAIFSLIALVITAGTVVVFGETLTNP
TDIVARIDNVTLTVVAAITFFAATVGINLVANFIPPAYDIANLAPARISARTGGFITAAI
AFFIGALWVAFISEVGIAAFVDTLGAVLAPLYGIIVADYYLVRRQRLDLQQLFSAERSGI
YHFNAGWNRKAMIAFGVSAVFSVASVWMPGLENLSGFAWLLGALFGGVLHYGLMRNQQLV
ANPVQAAPPG