Protein Info for Psest_0550 in Pseudomonas stutzeri RCH2

Annotation: Predicted permease, DMT superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 77 to 94 (18 residues), see Phobius details amino acids 100 to 118 (19 residues), see Phobius details amino acids 125 to 141 (17 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 179 to 200 (22 residues), see Phobius details amino acids 208 to 225 (18 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 262 to 281 (20 residues), see Phobius details PF00892: EamA" amino acids 9 to 140 (132 residues), 52.8 bits, see alignment E=2.6e-18 amino acids 150 to 276 (127 residues), 33.6 bits, see alignment E=2.3e-12

Best Hits

KEGG orthology group: None (inferred from 97% identity to psa:PST_3734)

Predicted SEED Role

"Protein of unknown function DUF6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHB6 at UniProt or InterPro

Protein Sequence (290 amino acids)

>Psest_0550 Predicted permease, DMT superfamily (Pseudomonas stutzeri RCH2)
MNDHHHPLYGVLLILLSGLLLASHDGLAKHLSEIYPVFLVIWARYVAQTVLMTALFVPRM
GQRVFRTLRPWPQLLRGLSLVSVSLLFINGLHFIPLAEATAVIFLTPVLVTIASALLGER
VSRSQWLAVGFGLLGVLIIVRPGSALFTPAVLLPFGAALSFTVYQLVTRRLAGTDHPVTS
NYLTSLVGCVTLSVLVVFNWRTPTLHDALLMGALGGMAMLGHLLLTNAFRFASAATLAPF
TYGQIVFAGVVGYVAFDHAPDAGALIGMAVIIASGLCMAYVQRRQGPVEG