Protein Info for PGA1_c05450 in Phaeobacter inhibens DSM 17395

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 229 to 246 (18 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details PF06181: Urate_ox_N" amino acids 6 to 298 (293 residues), 452.4 bits, see alignment E=3.8e-140

Best Hits

KEGG orthology group: None (inferred from 80% identity to sil:SPO0869)

Predicted SEED Role

"conserved hypothetical membrane protein, paralogue of Y20848"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EUB0 at UniProt or InterPro

Protein Sequence (410 amino acids)

>PGA1_c05450 Predicted membrane protein (Phaeobacter inhibens DSM 17395)
MFELLMMWDWLGFAIRWLHVITAIAWIGSSFYFIALDLGLRKAPDLPVGAHGEEWQVHGG
GFYHIRKYLVAPAEMPDHLTWFKWESYMTWLSGFALLMVVYWVGGELYLIDQSKADLALW
QGILISAATLSVGWLVYDRLCKSGLAERPTLLMVLLFVMLVAMGWGLNQVFTGRAMMLHL
GAFTATIMTANVFFIIMPNQRIVVKDLQEGRAPDAKYGKIAKLRSTHNNYLTLPVVFLML
SNHYPLAFASEYNWLIAALVFLMGVTIRHYFNTRHARGGNPTWTWLATALLFLGVIILSS
LGLEHEGDDAREEAALSGTALAMANTEGFEQVHEIVMGRCSMCHAREPFWDGIRTAPKGV
LLETEGDVARRAGEIYLQAGVTHAMPPANITYMEPEDRAAIRAWFRAAQM