Protein Info for PGA1_c05380 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 29 to 47 (19 residues), see Phobius details amino acids 59 to 74 (16 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 163 to 181 (19 residues), see Phobius details amino acids 218 to 238 (21 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 376 to 401 (26 residues), see Phobius details amino acids 416 to 445 (30 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 58% identity to sit:TM1040_2399)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EWR4 at UniProt or InterPro

Protein Sequence (487 amino acids)

>PGA1_c05380 hypothetical protein (Phaeobacter inhibens DSM 17395)
MPNALAYLMLIAWPVITYKLFQRVSLQQAILWCVIGGYLFLPPLAVFDLPLVPDMDKDSI
PAVVAFVICAYILRKRVEIWPRHPVMRALVAIFLGSVIATVLTNGDPIVFRVIENAEPIV
FPTYALPGLRWRDLGSVMINQMIVLLPFFLARRYLSHPDQQRQLVMVLMVAGLIYSIPSL
FEVRFSPQINTWVYGFFQHDFSQTMRQGGFRPIVFLPHSLWLALFMLMSVLAATALARSA
EGPDKRRYTMAAIYLFAVLILCKSIASLVYGLIFTPFVAMASYRMQMRLALALGVVAIVY
PMLRNLGLVPVDAILAQAQAFSPERAQSLGFRFTNEALMLDRAADKPWFGWGGWGRNLVR
NLESGEIESIPDGRWILVFGTFGWVGYIAEMGLLAGPLVLLWQQVRRHAASTLSPFAAPL
ALMLAATLVDMLLNATLTPVTWLCAGSVLGYAERLRYPGLFSPKRQLFDGHQALATAPPP
RKRRSVL