Protein Info for PGA1_c05360 in Phaeobacter inhibens DSM 17395

Annotation: putative glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 288 to 307 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 24 to 261 (238 residues), 51.5 bits, see alignment E=1.9e-17 PF00535: Glycos_transf_2" amino acids 27 to 162 (136 residues), 54.7 bits, see alignment E=1.8e-18 PF13632: Glyco_trans_2_3" amino acids 117 to 278 (162 residues), 41.5 bits, see alignment E=2.2e-14

Best Hits

KEGG orthology group: K07011, (no description) (inferred from 66% identity to sit:TM1040_2401)

Predicted SEED Role

"dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL" in subsystem dTDP-rhamnose synthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EJF4 at UniProt or InterPro

Protein Sequence (356 amino acids)

>PGA1_c05360 putative glycosyl transferase (Phaeobacter inhibens DSM 17395)
MTNATAPFAAQPVDASSGGTNARILTIILNYKTPQMTLDCAAAALEQMEELPSEVVIIDN
GSADGSYEQLLTAVQARGWLDSGRLRLIASDRNGGFGAGMNIGFRLGLSDGSAPEFYYLL
NSDAFVQPGAIRALRDFLQATPGAGLVGSYVRGTDGTPHCTAFRFPTIAGEFESSVRTGI
VTRLLKDAVVPMEIPTTPTQLDWTAGASLMIRREVIDAVGGFDETFFLYFEETELCHRAA
RAGWSTHYLPESEVAHVGSASTGMKDWQRTPQYWFDSRLHYFLSTHGRAYTVGATLALIS
GSLLYGLRRLVSDKPASDPPYFLRDLIVHHSRAIFRRRKNQPMEPRQTPPQPEEQK