Protein Info for PGA1_c05350 in Phaeobacter inhibens DSM 17395

Annotation: dimodular nonribosomal peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1544 PF00551: Formyl_trans_N" amino acids 61 to 153 (93 residues), 56.8 bits, see alignment 7.7e-19 PF02911: Formyl_trans_C" amino acids 193 to 288 (96 residues), 30 bits, see alignment 1.4e-10 PF00501: AMP-binding" amino acids 548 to 762 (215 residues), 200.7 bits, see alignment E=1e-62 amino acids 1136 to 1273 (138 residues), 107.4 bits, see alignment E=2.3e-34 TIGR04020: natural product biosynthesis luciferase-like monooxygenase domain" amino acids 778 to 1128 (351 residues), 470.7 bits, see alignment E=2.8e-145 PF00296: Bac_luciferase" amino acids 792 to 1103 (312 residues), 150.5 bits, see alignment E=2.3e-47 PF13193: AMP-binding_C" amino acids 1336 to 1408 (73 residues), 30.8 bits, see alignment 1.4e-10 PF00550: PP-binding" amino acids 1438 to 1502 (65 residues), 44.7 bits, see alignment (E = 3.9e-15)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EUA3 at UniProt or InterPro

Protein Sequence (1544 amino acids)

>PGA1_c05350 dimodular nonribosomal peptide synthetase (Phaeobacter inhibens DSM 17395)
MTPFSCIVLGNESLLVACADMLLARSHSIAAVVTKDAEIRQWAADKGLSVLEDARDFGGS
VDWLLSIANLEIIPDSVLARASKGGVNFHDGPLPRYAGLNTPNWALIEGATEYGITWHMI
EGGVDEGDILAQRLFAIAGDETAYSLNAKCYAAAMDSFGDVLGQLETGTLARQAQDFSTR
KLYTRANRPEAGALLDLTQPAADLYRLVRALDFNGYWNPLCAAKVQLSANSGVPIALIGT
AEIAEGSGVPGTVLSVDAKTVTLACGDGALRLGGLHHSDGRPIRATDHVQTGDVLPSLDA
EDRRDLTRQLTATQASESKWRKALAALPAVDLPLAGPAIDAPADITHHTLSHNVALTEID
VLSVALALTLCSSGAEAAGIALSTDALQEAAIAGMICDWVPVQARRDAPFDDLRSRLTAE
LDSTRNSGGFAADLIARAPELRQTGGSGLCPDIGCMLGRAQHIEGCAATLSLTEGALALH
IDTGRLDAQAAELLMGRVEMLANVLASASGGTIADLPVLPEAERRQMLVDWNSTARSDTG
QSTIPAEFAAQVARTPEATALVYEGESLTYAELSAQVDDLAAILHDRGVAPGSHVGIYLG
RGPDLVIAALATMAAGGAYVPLDPAYPADRIAHFITDSAASVILTDSGHRDQLPGTLSAD
ILCLDALPEVPAAAETAATAPGPQDLAYLIYTSGSTGTPKGVMVRHGNVANFFAAMDDRI
PHQPGDCWLAVTSLSFDISVLELFWTLSRGFKLVLSSDEARLQLSNGPIATSDRGMDFNL
FYWGNDDGPGPRKYELLLEGAKFADQHGFNAVWTPERHFHAFGGPYPNPAVTGAAVAAVT
ENIGVRAGSCVAPLHHPARIAEEWSVIDNLTDGRAGIGFASGWQPDDFVLRPENTPPANK
PALFEAIETVRKLWRGEEVAFPRKDGGDHAVLTQPRPVSKELPVWVTTAGNPETWREAGS
IGANVLTHLLGQSIEEVAGKITIYHDALRAAGHDPRDHKVTLMLHSYLADTREDARATAR
EPMKDYLRAAAGLIKQYAWAFPAFKKPEGVKNPFEMDLGMLSAEELEAILDFAFERYFED
SGLFGTIADALQRVEQLKQIGVDEIACLIDYGIAPEIVLEGLKPLAEVLRLANAPQELAA
EDVSLAAQILRHGVTHMQCTPSMARMITADADARPVLGRLSHLLIGGEALPGDLVASLRA
TTHAEIHNMYGPTETTIWSTMQTLADVPAGTAQIGAPIANTTVYVVDDSQTPQPVGVPGE
LLIGGAGVTAGYWQRPELTAERFIPDPFADAGTHVPSTHLYRTGDLVRWRGDGQLEFLGR
SDHQVKIRGQRIELGEIEAALAALDGITGAVVVARETAGDTRLIAYVTGPVAPDQAVLKT
ALTQQLAAVMVPSHIEHLAAFPLTPNKKIDRKALPDPKPVQISVPTSDAPLSAGAQSKIA
EIWSDILGISGIGAEDNFFTLGGHSLLAVQAHRDIRGALDVPKLSITDIFRFPTLSGLAG
HIDALTGAPATEDATVAPAVDPAAKSDMMSKRRAMRANRKARSG