Protein Info for PGA1_c05290 in Phaeobacter inhibens DSM 17395

Annotation: polysaccharide biosynthesis protein ExoT-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 50 to 69 (20 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 122 to 139 (18 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 219 to 235 (17 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 302 to 321 (20 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 366 to 389 (24 residues), see Phobius details amino acids 395 to 413 (19 residues), see Phobius details amino acids 425 to 443 (19 residues), see Phobius details PF01943: Polysacc_synt" amino acids 17 to 280 (264 residues), 77.9 bits, see alignment E=9.2e-26 PF13440: Polysacc_synt_3" amino acids 41 to 331 (291 residues), 160.9 bits, see alignment E=4.4e-51

Best Hits

KEGG orthology group: None (inferred from 60% identity to sit:TM1040_2408)

Predicted SEED Role

"Polysaccharide biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DME7 at UniProt or InterPro

Protein Sequence (454 amino acids)

>PGA1_c05290 polysaccharide biosynthesis protein ExoT-like protein (Phaeobacter inhibens DSM 17395)
MQQVLSLFQGESLAARVLRSASWLMMGYGGSQALRLAANLVMTRLLFPEAFGLMALVSVV
ITGLALFSDMGIGPSIAQSKRGDDPDFLDTAWSVQVVRGFALWGLTLLLAWPVSQFYDAP
ELLWYLPIAGIALVINGFDPIRVETAHRHLLVGRLTALELLSQAIGIGAMVLLAWWTQSV
LALVLGSVLQAAAFLLAVHLGLPGRRSQFRWEAKALKELLHFGKWIFLSTAFWFLTSQGD
RAILGKFVPLDVLGIYNIGFFLASFPMALGHAVNQRLMIPVYRDKPAHVAPEYRRKQRQL
RAGLSAMILTILLSMAWLGPWLVDLLYDARYAYAGPMVVLIALAMVPAVITMTYDQAALA
AGDSRSFFFFTAARAMAQTGLFLAGVILFGLTGGIAALALAMVLAYPVMIWLATKHHVWD
PLHDLLFTGLAAVVGLSAIWWHWGRLAEMINAVG