Protein Info for Psest_0507 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized membrane-associated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 19 to 78 (60 residues), see Phobius details amino acids 107 to 123 (17 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 260 to 277 (18 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details PF09335: VTT_dom" amino acids 39 to 163 (125 residues), 74.3 bits, see alignment E=1.3e-24 PF01569: PAP2" amino acids 285 to 399 (115 residues), 68 bits, see alignment E=6.9e-23

Best Hits

KEGG orthology group: None (inferred from 90% identity to psa:PST_3786)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GII0 at UniProt or InterPro

Protein Sequence (439 amino acids)

>Psest_0507 Uncharacterized membrane-associated protein (Pseudomonas stutzeri RCH2)
MSQWLDTLTQWLAANPQWLGLALVIVACMECLAVVGLIVPGTVMVFAIAVLAGSGVLTLG
QTLLLGFIGGLIGDLLSYALGRRYHQGIRSLRGLRDHPEWLLRAEHYFQRYGVASLLVGR
FIGPLRPMLPMTAGMLDMPFGRFLLVSLCAAAGWSMAYLLPGWSAGAAMRLPLQDGFWSE
AAVVVGALLILIGATAYGSLRQLRWVSAVSAGLSVVILLGLFFGWPHLKELDEGLLAVIQ
GERSATFDRVMVVITRTGDFHTQLWAAVLLCVLLLLARQWRAALFAVCTLLGTAVANGAL
KATFARVRPEVLMEPLSSYSFPSGHSSAAFAFFLTLGVLAGRGQPPRLRLAWLVLASLPA
TAIALSRVYLGVHWTTDVTAGALLAASICAASLSLAQWRSPLAAMAPKVWWLILPACLGL
LGAFSIWALPTAMQMYRYQ