Protein Info for PGA1_c05000 in Phaeobacter inhibens DSM 17395

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 940 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 202 to 224 (23 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 258 to 275 (18 residues), see Phobius details amino acids 281 to 297 (17 residues), see Phobius details amino acids 304 to 323 (20 residues), see Phobius details amino acids 329 to 346 (18 residues), see Phobius details amino acids 379 to 398 (20 residues), see Phobius details amino acids 404 to 422 (19 residues), see Phobius details amino acids 433 to 453 (21 residues), see Phobius details amino acids 472 to 491 (20 residues), see Phobius details amino acids 505 to 526 (22 residues), see Phobius details amino acids 535 to 554 (20 residues), see Phobius details amino acids 566 to 586 (21 residues), see Phobius details amino acids 592 to 608 (17 residues), see Phobius details amino acids 615 to 633 (19 residues), see Phobius details amino acids 657 to 677 (21 residues), see Phobius details amino acids 684 to 707 (24 residues), see Phobius details amino acids 719 to 735 (17 residues), see Phobius details amino acids 746 to 768 (23 residues), see Phobius details amino acids 788 to 807 (20 residues), see Phobius details amino acids 815 to 834 (20 residues), see Phobius details amino acids 853 to 873 (21 residues), see Phobius details amino acids 882 to 899 (18 residues), see Phobius details amino acids 905 to 924 (20 residues), see Phobius details PF10101: DUF2339" amino acids 139 to 925 (787 residues), 332.8 bits, see alignment E=2.9e-103

Best Hits

Predicted SEED Role

"FIG01026433: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DXQ1 at UniProt or InterPro

Protein Sequence (940 amino acids)

>PGA1_c05000 Predicted membrane protein (Phaeobacter inhibens DSM 17395)
MLEIGLPLLGLLGLVIVVGVPYLLVSHARLKARVAVLEASHASRKAPGRTEAKNVEEIAN
PAPSGKDEENAVEPWDGASRAALQSPATTSVQSTTETVSSDMPSPNISIANQEAQPQETP
RAFVFQEDTYRKLNQWLRENWVLTAGAASLALAGVFMVQYGAEHGLLTPFWRVMAALGFG
TALIAGGEVIRRRFGDDVEGSVQYLPSALAGAGLIALFSGIISARAMYGLLDPGSTFAAL
CLVSILAMILGWFYGPLLSALGLIGATAAPFLVGGQSDSPWLFYYYFALIAMVGLAVDTV
KRWAWVSVLALFATISANLLLFLTDAGGLHFLIATLLIAGAAIVIPERSLTPHHSGSSLL
DMRRLVNGTQKFPEFTTRLSAAVTGAASASAMLVVLDAGKPEEVYLGIATLMILLIATMI
WMRQAPALFDHALLPGLAILAVPVIEAISFGPLFREFLAGAQRPPETSAPSTVWILTTIG
GFGSLLAFFRMQQVEGASNAGDNTPVFWALAAAVYAPTMMLVLEFLWQPAAVTTAYPWAL
AVIAMAALMTLLAERTARGRDIEQRALRVALFAIAALTLIALAFFLLLAKSALTLALAVM
VLLTVLIDRKFDLPALGLFAQVGSAVITYRLVIDPGVPWATDFELVEQSWVPNSPISQVL
MAYIGTLTLMIGAWYFARDIRPKVALILESTLATISAVFISVMIVRVISGPGGGSHPDIG
LMATVWAASMVNQLYRMQSSGRFSLYVRGGLAAIYGLASLFLLIALFGDANPLISSYELV
SGPPILDSLAAAFLPLSCIFAVAAWKVAHFGHRVRATFTAASSFLIAWYTALEIRRLWRG
NDLTVPGITDPELYTYTLALLVTSIAILTVAFWRRSNLLRKFALGGVVLTIAKVFLIDMS
GLSGLIRVFSFMGLGLVLIGLAWINRIMKAQWNKGKPATD