Protein Info for PGA1_c00480 in Phaeobacter inhibens DSM 17395

Annotation: CAAX prenyl protease-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 192 to 207 (16 residues), see Phobius details amino acids 238 to 255 (18 residues), see Phobius details amino acids 267 to 295 (29 residues), see Phobius details amino acids 307 to 324 (18 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 380 to 398 (19 residues), see Phobius details amino acids 410 to 426 (17 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 474 to 492 (19 residues), see Phobius details amino acids 496 to 510 (15 residues), see Phobius details amino acids 512 to 535 (24 residues), see Phobius details TIGR04162: exosortase E/protease, VPEID-CTERM system" amino acids 27 to 542 (516 residues), 818.7 bits, see alignment E=3.6e-250 PF09721: Exosortase_EpsH" amino acids 72 to 325 (254 residues), 50.8 bits, see alignment E=1.6e-17 TIGR04178: exosortase/archaeosortase family protein" amino acids 230 to 324 (95 residues), 60.2 bits, see alignment E=2.9e-20 TIGR03008: CAAX prenyl protease-related protein" amino acids 353 to 542 (190 residues), 102.1 bits, see alignment E=6.2e-33 PF02517: Rce1-like" amino acids 444 to 528 (85 residues), 64.1 bits, see alignment E=1.2e-21

Best Hits

Predicted SEED Role

"FIG00919237: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DL19 at UniProt or InterPro

Protein Sequence (542 amino acids)

>PGA1_c00480 CAAX prenyl protease-related protein (Phaeobacter inhibens DSM 17395)
MSISDQALTAGETGRVAQRGGRRLVLILGLAVVELFIIMVAYQLLANVHCKFTGADLACT
TVRSIAGRLLALLTVLGLYLILMRNAYHALTAAIGQAPRRPSALALNFAGLIIALVPLAL
FGPAGINAWISPTLILICLGGAIAGLGGVLSLMPLRAWLVWLRGCGFSLTLALMVALVMP
DITRMMEPIWNIEALTSVTFILVTWVLEVSGATVWSDAALHLIRVDGFLVEIGEPCSGVE
GFALVTTFMGLYALLMGRDIRQTRYWLVLFPAALLLSWAFNVARIAILILIGAWIAPEHA
VNGFHSYAGWLMFTLLALLVLAIAHRSRWLQSNPEALAAAAAELPPMRADMLLASIIPFI
VMMLSGVLVSAIWANPAQGYPLRAAMMAAALLVFWPALRQLAYRPRPIDIASGAAIAAVW
IVTSTPDISRGGTDERDMLWVGTRLLGTMVLVPIVEELFFRGYLLRRMAGQGQILRAVIA
LLVTSALFGLMHDRFALGMAAGAIFGALYLRGGGLAAAILAHMVANALIAYVAFATENWA
LI