Protein Info for Psest_0047 in Pseudomonas stutzeri RCH2

Annotation: Predicted esterase of the alpha-beta hydrolase superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 46 to 67 (22 residues), see Phobius details PF01734: Patatin" amino acids 14 to 226 (213 residues), 95.3 bits, see alignment E=2.8e-31

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 95% identity to psa:PST_4145)

Predicted SEED Role

"Patatin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GGV5 at UniProt or InterPro

Protein Sequence (407 amino acids)

>Psest_0047 Predicted esterase of the alpha-beta hydrolase superfamily (Pseudomonas stutzeri RCH2)
MTEDAVKNPGTTGLILSGGGARGAYQVGVLSAIADLLPDPAGNPFPVIVGTSAGAINAVS
LACGALHFREAVRRLSSVWRSFHTDQVYRSDWPGVLRQASRFLGHSMFGIGKQVPVALLD
SSPLARLLERELDFSGIAAALRQQQLRAIAVTAFGYESAEAVTFYQGHAAIDPWLRHRRV
GVPTRLGIPHLLASTAIPLLFEPVKINREYFGDGAVRQTAPISPALHLGATRVLVVGVSG
NPVDDQSEIAPTPRPTGASPSLAQISGHMLNSTFIDNVETDIELLERLNQLGRLVPAEQR
KRAYGLTPVEVLVISPSQPLDRIAARHRRELPAAMRLFLRGPGGTREGGGGLLSYLLFEP
GYCSELIELGYQDAMAKQAELRAFLRLEKPEQRSQQLSPNAQSVFSG