Protein Info for Psest_0457 in Pseudomonas stutzeri RCH2

Annotation: Lipopolysaccharide kinase (Kdo/WaaP) family.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF06293: Kdo" amino acids 23 to 223 (201 residues), 204 bits, see alignment E=9.3e-65

Best Hits

KEGG orthology group: None (inferred from 70% identity to pmy:Pmen_0584)

Predicted SEED Role

"InaA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GID6 at UniProt or InterPro

Protein Sequence (248 amino acids)

>Psest_0457 Lipopolysaccharide kinase (Kdo/WaaP) family. (Pseudomonas stutzeri RCH2)
MNDFIAQADRATLERHGLAGFDALWSVQLTAVDEPNVERGGWSSVFRLELDDSAFYLKRQ
SNHLTRTLAHPFGEPTFAREFRNIRRYAQLGVPALQASFFGQRKVGGDRRAILLTRALDG
WMDLEGWLKRWPELDESHRQAIVGAVGRLARTLHQAGQMHGCFYPKHIFLREQGGDWKAC
LIDLEKTRPLLLGRRDRIKDLEPLVRRASCIGEQGVRHLLNAYLDDPRQVEPWQLQLQRR
HEAKEARG