Protein Info for HP15_432 in Marinobacter adhaerens HP15

Annotation: outer membrane protein (porin)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13609: Porin_4" amino acids 9 to 302 (294 residues), 116.4 bits, see alignment E=1.2e-37

Best Hits

KEGG orthology group: None (inferred from 75% identity to maq:Maqu_0773)

Predicted SEED Role

"Outer membrane protein (porin)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PMR8 at UniProt or InterPro

Protein Sequence (335 amino acids)

>HP15_432 outer membrane protein (porin) (Marinobacter adhaerens HP15)
MKKTLIASAIAAATFSGSVFAQSEMSASELAAKMDSMPSVYGNIQYVLTHTNVDGAGSTV
EHADNGSTLGVKHDHEIAPGITGFFKLELEGINADDKSSSNGIDALDEAYIGVKGDSFGQ
VWVGSDDSVYESAIVKIGNFHEVGSDIFGNYSTGEGDLVQYMSPSFGGLTVAAAVQVNGD
NDTKGGADKSYPYQLVATYAVDALEVSFGMDSNDGGAAADNNENSYGLTATYSAGDFSVI
GEYQTRKDVNDIVGVMGVYTMGANQFALSYQMLDDDASGDKKDTVILQALHNVSDHMYVY
FEGYLSGADAANEYSLEGASGDEQSIAALGAVYYF