Protein Info for HP15_p187g105 in Marinobacter adhaerens HP15

Annotation: integrase, catalytic region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF00665: rve" amino acids 80 to 178 (99 residues), 78.9 bits, see alignment E=3.1e-26 PF13683: rve_3" amino acids 166 to 231 (66 residues), 67.3 bits, see alignment E=8.4e-23

Best Hits

KEGG orthology group: None (inferred from 73% identity to pba:PSEBR_cmegl34)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PS67 at UniProt or InterPro

Protein Sequence (239 amino acids)

>HP15_p187g105 integrase, catalytic region (Marinobacter adhaerens HP15)
MLDFVREERLHQPRLGTRKLHSLLKPKALCIGRDRLFDLLRAHRQLVPRKRAYHKTTHSH
HHFRCHPNLLKAGPEQVVPDAPEQLWVADITYLPTRQGSAYLSLITDAFSRKIVGHHVHD
TLHTAAVIQAMQKALKGRQYSGGLVHHSDRGVQYCSAPYQQLHAKYGIRCSMTDGYDCYQ
NALAERVNGILKTEFLLVLPKDLAEAQKMVDQSVQTYNTRRPHLALKYKTPDAVHRAFR