Protein Info for HP15_424 in Marinobacter adhaerens HP15

Annotation: MshQ-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1474 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF10102: DUF2341" amino acids 73 to 138 (66 residues), 43.6 bits, see alignment (E = 5.3e-15) PF13385: Laminin_G_3" amino acids 216 to 355 (140 residues), 54.1 bits, see alignment E=3.3e-18 PF20419: DUF6701" amino acids 894 to 1474 (581 residues), 480.4 bits, see alignment E=1.9e-147

Best Hits

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PMR0 at UniProt or InterPro

Protein Sequence (1474 amino acids)

>HP15_424 MshQ-like protein (Marinobacter adhaerens HP15)
MKWTKTNRPISGLLSVLVLMAWAGFSEAAWFDPDWNYRKAIQIQASQVVGDQSDFTVMFR
AIDSDLASSAQADGDDIVFALEDGTQLDHELERYDGNTGELVAWIRIPTLPASANSSLYL
YYGNPSAGNQESPAGTWDNDFQMVHHLEESGDRQTTLEDSTANLNNGDLVGQNNNYPTYL
NNGIVAGARAHPGQFANGQSEDPAVRFFDFGDPGLSTSFTAEAWARVSGNQSGSDHHPIL
WKGNVIGWGANYFFRIAVRQNNGITWGVTCGNTEAWFDGGSASSGWAHYAISFDGTTTRA
YINGQQVASDNDCAGRTLNLTSQPFRSGYGIVQGNGETILNGDVDEVRISSLARSGGWLR
THYNNLSDPAAFFVIGNEETGGFCSTLTALFCDDFERNSLGPDWSVVTASGGDAGISSQT
SKSPTRSLYTSSGFAGVTLAPLDLSGLTSGTVAYWWRRGDDAFSEDPDGGEDLRVEYLDD
AGNWDLIDRYPGNGTNGESGDVVFTLPPDAFHGDFQMRFVQESGNSGNFDFWHIDDVVID
GNSSPLTCAGDTFGTATLSPDDWITNVSSGSFTPGIVNGRLRMTEASGNQATAATFQNLI
PGADNYVRLEFDYFAYGGNGADGLTVVLSDASVTPQPGSFGGSLGYAQRNNGDPGFAGGW
LGIGLDEFGNFSNATEGRVGGTGFVRDAVAIRGAAQSNYQYLGGTGSLNPGIDQPGNNPT
PHRYRIIVDSRGGIGPIVSVERDVSGAGNNFQQLVQLDLSSFPNQPATPQNFYLSLTGST
GGSTNIHELDNLQLCAEKLNPVGKLVDHFEFVHDGTALTCQPETVTVRACENADCSVLFT
DPVDVTLSPSGWVGGDSFAFSGGQASRQLQITTAGTARLAIASSSPSTKAFTQTLCDNGV
GSVSAAACDLPFLDAGLAFDIPDLISHQPATSIQISAVRRDNQTGACVPAFENVQREVNF
WSTYVDPGPTGRPESRPVFVDNTAVGSGQSNATPISLQFGAGGIAEVDILYPDAGLINLD
ALYLGSAATNDDGLQMPGADSFVSVPAGFCVTSAGDCPAGDSTCPAFRKAGQSFDLSITA
VGWEQNGDGDLCQGNPITPNFRLLDIPLSTTLVQPAGGASGSVSPVSYSHTRSSSAEEIV
GAEVSEVGVFRFEASPLPGSYLGRDVPSGSSLPIGRFYPDRFQVSVDPGEFEAQCSTGSP
LAYTGEAFDWLVTPSLTIEPLSVQGTRTLNYTFTGFQKLVASDINRLYPSSDSAAVDRVG
AFMALSPTEFGGSLTAPVSSLGSGLMRYDFSASDSFAYNKTTDAQIAPFAPQLEFSVTSL
VDSDGVAAAAAPYPFTPVAAFDIRYGRFSLDNVYGPENIGSLPMPFRLEYWDGSRFMTHM
NDSCTTWNTADLTNSANHHSLSAGAPPSDTFSMGEAPPLELVPNGTRGTDSLVWNVDAWL
EFDWNDDGTLEDPVGLATFGVYRGHDRVIYWQER