Protein Info for Psest_4389 in Pseudomonas stutzeri RCH2

Annotation: Relaxase/Mobilisation nuclease domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 PF03432: Relaxase" amino acids 66 to 251 (186 residues), 31.5 bits, see alignment E=7.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GS75 at UniProt or InterPro

Protein Sequence (559 amino acids)

>Psest_4389 Relaxase/Mobilisation nuclease domain. (Pseudomonas stutzeri RCH2)
MIHGLSKHTAVAVAAIDYFLADEYLDKDCGEWKVREPAPELLEGDPIQMRALCDSLSFKN
RYTSGVLSFTKDETDKINSTPGMKEALIEELRSFAYAGFKNDDSKALLVVQHSHLDRLEL
HYMIPRVSLESGLYFNPFPPNYDGKRGPGNNQAYLNQNDAFVDHICEKYGLQNPRDPSIS
RELKEPVFDTEKDNKTIRRQVVEAIDRQIDAGAINSREDMTKFLESHGATITRKGEDYFS
FKFPEMSKAIRLEGELYGKQSFAEIGKRYEERREAFEASRGSAGSRYDAAIAERASEVEG
RHGKRTEEAERAKNIDPRAERELTETAEALKDELGSIDSTINNLAADCIRENPGLMKAGA
LSAGGGGSSAALGGGGGGGGGVSTDAVSDTSVGKTGNAILDELIQAFHSWKKAQAKKAAA
AVSMPFPEKKKSSAVKNGIKNFVSAFTNKLAFKVSVVTGYNFVEPERGKLQLDDMRLYRK
ALNEQLIEARHDLKELERLHKAERQVEETRSPLAMVEKLKAENPGLTFKSEVLRNAAERW
KEEQKERGPKRREEDEYGL