Protein Info for HP15_p187g10 in Marinobacter adhaerens HP15
Annotation: type II secretion system protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Flp pilus assembly protein TadB" in subsystem Widespread colonization island
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E4PRX2 at UniProt or InterPro
Protein Sequence (305 amino acids)
>HP15_p187g10 type II secretion system protein (Marinobacter adhaerens HP15) MSVQLLWLLSLALGVLGIAVILLQLVVGQVLSLSFLKKRTYARLEEDGSAEEPSSSSSKS GLLENLLLRANVKLSPRKAAFLAVLAVIGLLMIGMTRGWIEAGAGLFFIVTAAVTWWRVT FERQRRQIFEELPSILDGMIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQGRD YTRVIDEFAALYQIPDLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATA ETRFTAVAFAIIPPGLAAYMVILNDGFSAQLLDTNAGQTLLWMSGILQLIGIVFIWRLIQ GVGRG