Protein Info for Psest_4324 in Pseudomonas stutzeri RCH2

Annotation: DNA repair photolyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 PF04055: Radical_SAM" amino acids 68 to 247 (180 residues), 69.5 bits, see alignment E=2e-23

Best Hits

KEGG orthology group: None (inferred from 79% identity to pmy:Pmen_4466)

Predicted SEED Role

"Radical SAM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GPV7 at UniProt or InterPro

Protein Sequence (354 amino acids)

>Psest_4324 DNA repair photolyase (Pseudomonas stutzeri RCH2)
MTHHPVTPRGRGTAVNPDNRFAPTRSEVCDDGWEQDVPPTRATEVRQEIAKSVLTRNQSP
DVGFDRSVNPYRGCEHGCIYCFARPTHAYWDLSPGIDFETKLIAKTNLAERLEAELSKPG
YVPQPIALGVNTDAYQPLEREQQLTRQALEVLLRFKHPVHIITKGSLVLRDLDLLVPLAE
QRLVSVSVSLTTLDDELKRIMEPRAASPTARLRVLRTLHEAGVPVSVMCAPMIPMINDME
LERMLEAAREAGARSAGYVLLRLPHEVAALFEGWLQEHFPQRAAHVMSLVRQSRGGKDYD
SRFGSRMRGEGQFAQLLAQRFQLACKRLGFNRRDQNYGLDCSLFAPPGQQLSLI