Protein Info for PGA1_c04320 in Phaeobacter inhibens DSM 17395

Annotation: protein PhnM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 TIGR02318: phosphonate metabolism protein PhnM" amino acids 7 to 379 (373 residues), 425.4 bits, see alignment E=9.2e-132

Best Hits

KEGG orthology group: K06162, PhnM protein (inferred from 74% identity to sit:TM1040_3695)

Predicted SEED Role

"Metal-dependent hydrolase involved in phosphonate metabolism" in subsystem Alkylphosphonate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DM02 at UniProt or InterPro

Protein Sequence (380 amino acids)

>PGA1_c04320 protein PhnM (Phaeobacter inhibens DSM 17395)
MTEPLILANATLVLPGETRVGSITLTDGLITDIADGASVPKGAIDLGGDYLCPGLVELHT
DNLERHIQPRPKVDWPHAAAIIAHDAELAGTGITTVFDAMRVGSIKAAEARYGAYARSLA
SELLELRDQDALKISHFLHLRAEVCSETLVNELNEFGDADRVGLVSLMDHTPGQRQFRDM
SKLEAYVKGKHGFDDDGFKAHVAGLKRMRDTYGDLHEVEAVKAARRFGAVLASHDDTTAE
QVTVSAGHGIHLAEFPTTVEAARACHDHGIKVMMGAPNLIRGGSHSGNVAAKDLAQLELL
DVLSSDYVPAALLLAAAQLGEIWGDIARGLATVTSAPADAVNLTDRGRIDIGKRADLIRF
RMRAGVPALGAVWSRGNRVA