Protein Info for Psest_4260 in Pseudomonas stutzeri RCH2

Annotation: ABC-type multidrug transport system, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 913 transmembrane" amino acids 562 to 582 (21 residues), see Phobius details amino acids 718 to 741 (24 residues), see Phobius details amino acids 768 to 791 (24 residues), see Phobius details amino acids 797 to 818 (22 residues), see Phobius details amino acids 826 to 847 (22 residues), see Phobius details amino acids 887 to 908 (22 residues), see Phobius details PF00005: ABC_tran" amino acids 24 to 172 (149 residues), 93 bits, see alignment E=6.7e-30 amino acids 288 to 431 (144 residues), 101.4 bits, see alignment E=1.7e-32 PF13304: AAA_21" amino acids 138 to 195 (58 residues), 29 bits, see alignment 2.7e-10 amino acids 363 to 461 (99 residues), 30 bits, see alignment E=1.3e-10 PF12698: ABC2_membrane_3" amino acids 569 to 905 (337 residues), 143.9 bits, see alignment E=1.8e-45 PF12679: ABC2_membrane_2" amino acids 649 to 848 (200 residues), 29.6 bits, see alignment E=1.1e-10 PF01061: ABC2_membrane" amino acids 722 to 876 (155 residues), 53.3 bits, see alignment E=6.8e-18

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 67% identity to bav:BAV1814)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GTV5 at UniProt or InterPro

Protein Sequence (913 amino acids)

>Psest_4260 ABC-type multidrug transport system, ATPase component (Pseudomonas stutzeri RCH2)
MNTSPAPVAEISGVSLRYGKTRALDDLSLSLPARCMVGLIGPDGVGKSSLLALIAGARKL
QQGHVQVLDGDMGDAGHRRAVCPRIAYMPQGLGKNLYPTLTVFENLEFFGRLFGQDAEER
HWRIAELTRSTGLAPFVERPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRA
QFWELIERIRSERPQMSVLVATAYMDEAQRFDHLVAMDAGRILATGTPAELLARTNSDSL
EQAFIRLLPEAKRSQHRELVIPPQPHSDSIAIEAHGLTMRFGDFVAVDQVNFRIARGEIF
GFLGSNGCGKTTTMKMLTGLLPASEGDALLFGKPVDPHDMQTRQRVGYMSQAFSLYSELT
VRQNLDLHARLFHLPAERRGPRVQEMLTRFDLTGDAESLPSSLPLGVRQRLSLAVAVIHN
PEILILDEPTSGVDPVARDGFWELLVQLSREDGVTIFISTHFMNEALRCDRISLMHAGRV
LDSDTPQALMAKRGLPTLEQTFIAYLEEAAAAHAAEQPAAPPAATRNPVQPAGNNGRQAR
FSLRRLLSYTRREAMELRRDPIRATLAMLGSVLLMFIMGYGVSFDVENLTYAVLDRDQTT
TSQHYLLNMSGSRYFIEKAPLANHAELDQRMRSNDISLAVEIPPNFGRDLKRGAVPQVAF
WIDGAMPMRADTIKGYVQGIHLTYLQQLAREAGVNGQLAPADVAIRYRYNPDVQSLPAMA
PAMIPLLLMMIPAMLTALGVVREKELGSITNFYVTPTTRLEFLLGKQLPYIALGMFNFAT
LALLAVFVFGIPIKGSILTLCLGALLYVTCATGLGLLMSSILNSQIAAIFGTTIVTLLPA
IQFSGLIHPVSAMEGAGAFIGKLYPTSHFLIISRGVFSKALGLAELYPYFIPMLLAIPLL
TLLSVAGLRKQEK